Index A | B | C | D | G | L | M | N | P | R | S | T A as_dict() (brer.pair_data.PairDataCollection method) as_dictionary() (brer.run_data.RunData method) B bins (brer.pair_data.PairData attribute) brer.directory_helper module brer.md module brer.pair_data module brer.plugin_configs module brer.run_config module brer.run_data module brer_restraint() (in module brer.md) build_plugin() (brer.plugin_configs.ConvergencePluginConfig method) (brer.plugin_configs.PluginConfig method) (brer.plugin_configs.ProductionPluginConfig method) (brer.plugin_configs.TrainingPluginConfig method) build_plugins() (brer.run_config.RunConfig method) build_working_dir() (brer.directory_helper.DirectoryHelper method) C change_dir() (brer.directory_helper.DirectoryHelper method) ConvergencePluginConfig (class in brer.plugin_configs) create_from() (brer.pair_data.PairDataCollection static method) (brer.plugin_configs.PluginConfig method) (brer.run_data.RunData class method) D DirectoryHelper (class in brer.directory_helper) distribution (brer.pair_data.PairData attribute) G GeneralParams (class in brer.run_data) get() (brer.run_data.RunData method) get_dir() (brer.directory_helper.DirectoryHelper method) L linear_restraint() (in module brer.md) linearstop_restraint() (in module brer.md) M module brer.directory_helper brer.md brer.pair_data brer.plugin_configs brer.run_config brer.run_data N name (brer.pair_data.PairData attribute) P PairData (class in brer.pair_data) PairDataCollection (class in brer.pair_data) PairParams (class in brer.run_data) PluginConfig (class in brer.plugin_configs) ProductionPluginConfig (class in brer.plugin_configs) R run() (brer.run_config.RunConfig method) RunConfig (class in brer.run_config) RunData (class in brer.run_data) S sample() (in module brer.pair_data) sample_all() (in module brer.pair_data) save_config() (brer.run_data.RunData method) set() (brer.run_data.RunData method) sites (brer.pair_data.PairData attribute) T TrainingPluginConfig (class in brer.plugin_configs)